Output

GA4GH Phenools can be used to output data about cohorts as Excel or text files.

Excel

To compare two cohorts starting with their cohort files, we can enter

cargo run --features excel_export -- compare \
  --cohort1 cohort_a.json \
  --cohort2 cohort_b.json \
  --output comparison.xlsx \
  --hpo hp.json \
  --threshold 5

Note that we need to compile with the excel_export feature activated.